Paper backlog

Tuesday. June 16, 2020 - 10 mins

In light of the BLM protests, I took a hiatus from posting papers on Twitter. I kept looking at papers and saving links during this time though; here’s stuff that looked interesting to me between 5/31/20 and 6/17/20.

= Tweeted

5/31/20

• Motor corollary discharge activates layer six circuits in the auditory cortex
• Adaptive Efficient Coding: A Variational Auto-encoder Approach
• Adaptive optics two-photon endomicroscopy enables deep brain imaging at synaptic resolution over large volumes

6/1/20

• Gap junction mediated feed-forward inhibition ensures ultra precise temporal patterning in vocal behavior
• A mathematical model for storage and recovery of motor actions in the spinal cord
• A Bayesian and efficient observer model explains concurrent attractive and repulsive history biases in visual perception
• Vision reconstructs the cellular composition of binocular circuitry during the critical period
• Central opioid receptors mediate morphine-induced itch and chronic itch
• An adolescent sensitive period of heightened frontal top-down projection activity promotes local circuit integration and attentional behavior

6/2/20

• Neuronal Inactivity Co-opts LTP Machinery to Drive Potassium Channel Splicing and Homeostatic Spike Widening
• Large-scale color biases in the retinotopic functional architecture are shared across human brains
• Heterogeneous somatostatin-expressing neuron population in mouse ventral tegmental area
• Temperature compensation in a small rhythmic circuit
• The mechanism of analgesia in Nav1.7 null mutants
• Voltage-gated Ca2+ and K+ channel coupling regulates CA1 hippocampal synaptic filtering and spine excitability
• The neural representation of force across grasp types in motor cortex of humans with tetraplegia

6/3/20

• Heterosynaptic Plasticity Determines the Set Point for Cortical Excitatory-Inhibitory Balance
• The Sensory Coding of Warm Perception
• Precise Spatiotemporal Control of Nodal Na+ Channel Clustering by Bone Morphogenetic Protein-1/Tolloid-like Proteinases
• Postingestive Modulation of Food Seeking Depends on Vagus-Mediated Dopamine Neuron Activity
• Functional specification of CCK+ interneurons by alternative isoforms of Kv4.3 auxiliary subunits
• Mathematical models for pain: a systematic review
• Neuronal activity in sensory cortex predicts the specificity of learning.
• A physiological role for GABAA receptor desensitization – induction of long-term potentiation at inhibitory synapses
• A map of object space in primate inferotemporal cortex
• Potential circadian effects on translational failure for neuroprotection
• Network Architecture of Gap Junctional Coupling among Parallel Processing Channels in the Mammalian Retina
• Intracellular Calcium Responses Encode Action Potential Firing in Spinal Cord Lamina I Neurons
• Using a bistable animal opsin for switchable and scalable optogenetic inhibition of neurons

6/4/20

• Microstructural organization of human insula is linked to its macrofunctional circuitry and predicts cognitive control
• Feedback contribution to surface motion perception in the human early visual cortex
• Small dendritic synapses enhance temporal coding in a model of cochlear nucleus bushy cells
• Activity-dependent tuning of intrinsic excitability in mouse and human neurogliaform cells
• Information theoretic approaches to deciphering the neural code with functional fluorescence imaging
• Restoring light sensitivity using tunable near-infrared sensors
• Discriminating between negative cooperativity and ligand binding to independent sites using pre-equilibrium properties of binding curves
• 10 simple rules for teaching wet-lab experimentation to computational biology students, i.e., turning computer mice into lab rats
• NMDA receptors control cortical axonal projections via EPHRIN-B/EPHB signaling
• Equations governing dynamics of excitation and inhibition in the mouse corticothalamic network
• Relationship between input connectivity, morphology and orientation tuning of layer 2/3 pyramidal cells in mouse visual cortex

6/5/20

• Molecular, spatial and projection diversity of neurons in primary motor cortex revealed by in situ single-cell transcriptomics
• Synaptic dynamics as convolutional units
• A geometry of spike sequences: Fast, unsupervised discovery of high-dimensional neural spiking patterns based on optimal transport theory
• Locus coeruleus spiking differently correlates with somatosensory cortex activity and pupil diameter
• Three-photon imaging of synthetic dyes in deep layers of the neocortex
• Behavior- and Modality-General Representation of Confidence in Orbitofrontal Cortex
• Central processing of leg proprioception in Drosophila

6/7/20

• In vivo fluorescence imaging with a flat, lensless microscope
• Rapid purification and metabolomic profiling of synaptic vesicles from mammalian brain
• Anesthetics uniquely decorrelate hippocampal network activity, alter spine dynamics and affect memory consolidation
• A generative modeling approach for interpreting population-level variability in brain structure

6/8/20

• The growth and form of knowledge networks by kinesthetic curiosity
• Explaining #TheShoe based on the optimal color hypothesis: The role of chromaticity vs. luminance distribution in ambiguous image
• Self-restoration of cardiac excitation rhythm by anti-arrhythmic ion channel gating
• Cortical reactivations of recent sensory experiences predict bidirectional network changes during learning
• Multimodal in vivo recording using transparent graphene microelectrodes illuminates spatiotemporal seizure dynamics at the microscale
• Novel, provable algorithms for efficient ensemble-based computational protein design and their application to the redesign of the c-Raf-RBD:KRas protein-protein interface
• A zero-inflated gamma model for deconvolved calcium imaging traces
• Texture Interpolation for Probing Visual Perception
• Deep active inference agents using Monte-Carlo methods
• Sophisticated Inference

6/9/20

• Sex-Specific Disruption of Distinct mPFC Inhibitory Neurons in Spared-Nerve Injury Model of Neuropathic Pain
• Heterogeneous Habenular Neuronal Ensembles during Selection of Defensive Behaviors
• Kainate Receptor Activation Shapes Short-Term Synaptic Plasticity by Controlling Receptor Lateral Mobility at Glutamatergic Synapses
• Vangl2 in the Dentate Network Modulates Pattern Separation and Pattern Completion
• Hippocampal Interneuronal α7 nAChRs Modulate Theta Oscillations in Freely Moving Mice
• A Thalamic Reticular Circuit for Head Direction Cell Tuning and Spatial Navigation
• Engineered Illumination Devices for Optogenetic Control of Cellular Signaling Dynamics
• Quantitative fluorescence lifetime imaging uncovers a novel role for KCC2 chloride transport in dendritic microdomains
• Hippocampal remapping as hidden state inference
• Topography of speech-related acoustic and phonological feature encoding throughout the human core and parabelt auditory cortex
• Wiring Up Vision: Minimizing Supervised Synaptic Updates Needed to Produce a Primate Ventral Stream
• Model-based prediction of muscarinic receptor function from auditory mismatch negativity responses
• Transduction catalysis: doxorubicin accelerates and enhances rAAV-mediated gene expression in the cortex of mouse, cat and monkey
• The neural basis of intelligence in fine-grained cortical topographies
• Topography of speech-related acoustic and phonological feature encoding throughout the human core and parabelt auditory cortex
• Excitatory effects of dentate gyrus mossy cells and their ability to influence granule cell firing: an optogenetic study in adult mouse hippocampal slices.
• Unsupervised Neural Tracing in Densely Labeled Multispectral Brainbow Images
• Evidence of progenitor cell lineage rerouting in the adult mouse hippocampus
• A Deep Learning Semiparametric Regression for Adjusting Complex Confounding Structures
• A functional spiking-neuron model of activity-silent working memory in humans based on calcium-mediated short-term synaptic plasticity
• Transplanting neural progenitor cells to restore connectivity after spinal cord injury

6/10/20

• Personalized Mapping of Drug Metabolism by the Human Gut Microbiome
• The mRNA translation landscape in the synaptic neuropil.
• Neuronal Glutamatergic Network Electrically Wired with Silent But Activatable Gap Junctions
• The neurons that mistook a hat for a face
• Different neuronal populations mediate inflammatory pain analgesia by exogenous and endogenous opioid

6/11/20

• How does it feel to be on psilocybin? Dose-response relationships of subjective experiences in humans.
• Super-resolution segmentation network for reconstruction of packed neurites
• Reverse-engineering Recurrent Neural Network solutions to a hierarchical inference task for mice
• Directed information exchange between cortical layers in macaque V1 and V4 and its modulation by selective attention
• NMDA receptors require multiple pre-opening gating steps for efficient synaptic activity
• A discrete neuronal circuit induces a hibernation-like state in rodent
• Cell type nomenclature for the mammalian brain: Development and application of a systematic, extensible convention
• Pruning neural networks without any data by iteratively conserving synaptic flow
• Compensation of physiological motion enables high-yield whole-cell recording in vivo
• Causal evidence of network communication in whole-brain dynamics through a multiplexed neural code
• A distributed network of noise-resistant neurons in the central auditory system
• Synaptic Connectivity between the Cortex and Claustrum Is Organized into Functional Modules
• Functional Analysis of Distinct Populations of Subthalamic Nucleus Neurons on Parkinson Disease and OCD-like Behaviors in Mice
• mPFC spindle cycles organize sparse thalamic activation and recently active CA1 cells during non-REM sleep

6/12/20

• Medial entorhinal spike clusters carry more finely tuned spatial information than single spikes
• Learning the synaptic and intrinsic membrane dynamics underlying working memory in spiking neural network models
• NMDAR-mediated transcriptional control of gene expression in the specification of interneuron subtype identity
• A new inference approach for training shallow and deep generalized linear models of noisy interacting neurons
• Anatomical correlates of face patches in macaque inferotemporal cortex

6/13/20

• Enhanced analgesic cholinergic tone after neuropathy
• An Adaptive Detection for Automatic Spike Sorting Based on Mixture of Skew-t distributions
• A new inference approach for training shallow and deep generalized linear models of noisy interacting neurons
• Parabrachial neuron types categorically encode thermoregulation variables during heat defense
• Dissociable control of unconditioned responses and associative fear learning by parabrachial CGRP neurons

6/14/20

• The impact of interneurons on nonlinear synaptic integration in the neocortex
• Molecular diversity of glutamatergic and GABAergic synapses from multiplexed fluorescence imaging

6/15/20

• PreBötzinger complex neurons drive respiratory modulation of blood pressure and heart rate
• Self-organization of multi-layer spiking neural networks
• State-dependent cortical unit activity reflects dynamic brain state transitions in anesthesia
• Training spiking multi-layer networks with surrogate gradients on an analog neuromorphic substrate
• Kernelized information bottleneck leads to biologically plausible 3-factor Hebbian learning in deep networks
• Differential effect of anesthesia on visual cortex neurons with diverse population coupling
• XDream: Finding preferred stimuli for visual neurons using generative networks and gradient-free optimization

6/16/20

• A learned map for places and concepts in the human MTL
• Emergent Properties of Foveated Perceptual Systems
• Minimax Dynamics of Optimally Balanced Spiking Networks of Excitatory and Inhibitory Neurons
• The PSPACE-hardness of understanding neural circuits
• Dendritic coincidence detection in Purkinje neurons of awake mice
• A neural circuit mechanism of categorical perception: top-down signaling in the primate cortex
• Robust coding with spiking networks: a geometric perspective
• Efficient population coding depends on stimulus convergence and source of noise
• Untangling stability and gain modulation in cortical circuits with multiple interneuron classes
• Accurate perceptual decision driven by distinct population dynamics in association and sensory cortex
• Combinatorial Developmental Controls on Striatonigral Circuits
• Postmitotic Hoxa5 Expression Specifies Pontine Neuron Positional Identity and Input Connectivity of Cortical Afferent Subsets
• Brain Circuit of Claustrophobia-like Behavior in Mice Identified by Upstream Tracing of Sighing
• Pupil-linked phasic arousal predicts a reduction of choice bias across species and decision domains
• System Identification with Biophysical Constraints: A Circuit Model of the Inner Retina
• The sensorimotor strategies and neuronal representations of tactile shape discrimination in mice
• Multilayer network analysis of C. elegans: Looking into the locomotory circuitry
• Variational Bayesian Monte Carlo with Noisy Likelihoods
• Instance-level contrastive learning yields human brain-like representation without category-supervision

6/17/20

• Ca2+ entry through NaV channels generates submillisecond axonal Ca2+ signaling
• Simulating a Primary Visual Cortex at the Front of CNNs Improves Robustness to Image Perturbations
• Dissociation of task engagement and arousal effects in auditory cortex and midbrain
• Circuits with broken fibration symmetries perform core logic computations in biological networks
• Prefrontal Cortex Predicts State Switches during Reversal Learning
• Two Functionally Distinct Serotonergic Projections into Hippocampus
• Potentiation of Divergent Medial Amygdala Pathways Drives Experience-Dependent Aggression Escalation

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